A plain-language summary of published research on SETD5 Syndrome, from foundational studies through the present.
Most recent
Almenar-Queralt et al. · bioRxiv, April 2026 · bioRxiv preprint preprint
What was studied: Most SETD5 research has focused on neurons (the brain's signaling cells). This study looked instead at astrocytes, a type of support cell in the brain where SETD5 is also highly active. Researchers used human stem cell-derived astrocytes with SETD5 mutations to observe what happens to neighboring healthy neurons.
Fernandez Garcia et al. · Nature Neuroscience, April 2026 · Read article
What was studied: Researchers at Yale University and the Icahn School of Medicine used CRISPR gene editing to knock out 23 neurodevelopmental disorder (NDD) genes -- including SETD5 -- in human stem cell-derived brain cells. The goal was to find out whether these different genes, which cause different NDD diagnoses, affect the same underlying biological pathways.
Northrup et al. · Genetics in Medicine Open, 2026 · Read article
What was studied: Researchers at UTHealth Houston surveyed 51 members of the SETD5-related disorder Facebook support group (August–November 2024) to document a broader range of medical features reported by families, and to describe how the online community supports affected families.
Kim et al. · American Journal of Medical Genetics Part A, March 2026 · Published online October 2025 · PubMed
What was studied: Researchers re-evaluated a group of patients who had been diagnosed with Noonan syndrome but whose standard genetic testing was negative for RASopathy genes. Using expanded sequencing, they identified the true genetic cause in several patients.
Orphanet (European Rare Disease Database) · March 1, 2026 · View entry (ORPHA:404440)
What changed: Orphanet's standalone entry for this condition -- previously titled "Intellectual disability-facial dysmorphism syndrome due to SETD5 haploinsufficiency" (ORPHA:404440) -- has been marked obsolete. Orphanet now redirects searches for this condition to the broader category Non-specific syndromic intellectual disability.
Heidargholizadeh et al. · Pediatric International, January 2026 · PubMed
What was studied: A team used whole exome sequencing to identify novel candidate genes in patients with congenital diaphragmatic hernia (CDH), a birth defect in which the diaphragm does not close completely, allowing abdominal organs to push into the chest cavity.
Rangel-Méndez et al. · Molecular Syndromology, February 2026 · Read article | Dai et al. · Molecular Genetics & Genomic Medicine, 2020 · PubMed
What was studied: Most published SETD5 cases involve de novo deletions or point mutations. Two papers add to the smaller body of literature on CNV gains (duplications) at 3p25 and on inherited SETD5-region losses.
Koparir et al. · Clinical Epigenetics, April 2026 · PubMed
What was studied: Researchers expanded the EpiSign library, a clinical diagnostic tool that identifies characteristic DNA methylation patterns (episignatures) associated with genetic syndromes caused by genes involved in chromatin regulation. SETD5 was among the conditions newly profiled.
2025 publications
Callahan et al. · Clinical Genetics, 2025; 108(3):279–291 · PubMed
What was studied: Researchers used the National Brain Gene Registry to identify and analyze 13 individuals with SETD5 Syndrome, aged 2 to 37 years. The study documented genetic variants and clinical features, including features not previously described in the literature.
Burnett et al. · PLoS Biology, 2024; 22(6):e3002668 · PubMed
What was studied: Researchers compared behavioral impairments across multiple different genetic mouse models of autism, including Setd5 haploinsufficient mice, to identify shared features that may point to common underlying mechanisms.
De Falco et al. · European Journal of Paediatric Neurology, 2024; 54:8–17 · PubMed
What was studied: A multicenter European team reported on 28 SETD5 Syndrome patients not previously described in any publication. The study focused specifically on neurological and psychiatric features.
MDPI Genes, 2025; 16(8):859 · Read article
What was studied: Clinicians published a case report of a child with SETD5 overlap syndrome who was treated with recombinant human growth hormone (rhGH) for documented short stature.
Alessi et al. · Journal of Child Neurology, November 2025; 40(10):915–918 · PubMed
What was studied: Clinicians described a 6-year-old child with a confirmed pathogenic SETD5 variant who developed an epilepsy presentation not previously documented in association with SETD5 Syndrome.
Sashiyama et al. · iScience 28(7):112699, 2025 · PubMed · Earlier bioRxiv preprint
What was studied: Researchers investigated why mutations in SETD5, ANKRD11 (KBG syndrome), and TBLR1 produce overlapping clinical features. They identified a shared molecular complex in brain cells that all three proteins participate in.
Dams et al. · Brain Circulation, April 2025 · Read article
What was studied: The authors report a patient with a confirmed pathogenic heterozygous SETD5 variant who was subsequently diagnosed with moyamoya syndrome -- a progressive narrowing of major blood vessels in the brain that increases risk of stroke.
Fan et al. · Birth Defects Research, December 2025 · PubMed
What was studied: Clinicians described a fetus identified prenatally with a SETD5 mutation, documenting which features were detectable before birth through ultrasound and genetic testing, and reviewing the existing published literature on prenatal presentations of SETD5 Syndrome.
Rivera-Munoz et al. · European Journal of Human Genetics, December 2025 · PubMed
What was studied: A large clinical exome sequencing study examined patients with congenital anomalies of the kidney and urinary tract (CAKUT) accompanied by additional clinical features. The goal was to identify genetic causes and expand the known phenotypic range of relevant genes.
Ansari et al. · Human Mutation, January 2025 · PubMed
What was studied: Researchers performed whole-genome sequencing on a cohort of patients referred for clinical evaluation of Cornelia de Lange Syndrome (CdLS), a rare genetic disorder that shares features with several other conditions. The goal was to identify the genetic cause in patients where standard targeted testing was negative or inconclusive.
Oguri et al. · European Journal of Medical Genetics, 2025 · PubMed
What was studied: Researchers analyzed epilepsy features and EEG (electroencephalogram) findings in patients with 3p deletion syndrome, a chromosomal condition whose deletions can encompass the SETD5 gene region depending on size and location.
Gaia Novarino's laboratory at IST Austria is conducting a SFARI-funded study using a conditional SETD5 knockout mouse model. This model allows researchers to selectively disable SETD5 in specific brain regions at specific developmental time points. The study is designed to identify which pathophysiological mechanisms are responsible for ASD and intellectual disability in SETD5 Syndrome, and to test whether behavioral and cognitive phenotypes can be reversed when SETD5 function is restored in adulthood. Results have not yet been published. View SFARI grant summary.
2022 publications
Gabellini et al. · International Journal of Molecular Sciences, 2022; 24(1):167 · PubMed
What was studied: Researchers used CRISPR/Cas9 gene editing to completely inactivate the setd5 gene in zebrafish and observed the resulting behavioral effects, with a focus on social behavior relevant to autism.
Pascolini et al. · American Journal of Medical Genetics Part A, May 2022; 188(5):1623–1625 · PubMed
What was studied: Italian clinicians described a child with a confirmed pathogenic SETD5 variant whose facial features and clinical presentation closely resembled KBG syndrome, expanding the known overlap between the two conditions.
2023 publications
European Journal of Pediatrics, 2023 · Read article
What was studied: Researchers enrolled 214 patients with short stature and multi-organ abnormalities and performed whole exome sequencing (WES) to identify variants in epigenetic modification genes. SETD5 was one of 19 genes identified across the cohort.
Zaghi et al. · Molecular Autism, 2023; 14:20 · Read article
What was studied: Human neural cells with SETD5 haploinsufficiency were created in the laboratory and analyzed to measure the effects on mitochondria (the structures inside cells responsible for producing energy).
Nakagawa et al. · Frontiers in Genetics, 2023 · PubMed
What was studied: Mouse models carrying either SETD5 or KBG syndrome (ANKRD11) mutations were studied side by side to identify shared neurological mechanisms.
Iwagawa et al. · FEBS Letters, 2023
What was studied: Researchers examined the retina (the light-sensitive tissue at the back of the eye) in models lacking normal SETD5 function.
ESPE 2023 · Conference abstract conf. abstract
What was presented: Additional cases of reduced bone mineral density and vertebral fractures in SETD5 Syndrome patients were presented at the European Society for Pediatric Endocrinology annual conference.
Ahsan et al. · Pediatric Neurology, January 2023; 138:25–26 · PubMed
What was studied: Clinicians at Children's Hospital Los Angeles described a patient with a novel pathogenic SETD5 variant who presented with two clinical features not previously documented in association with SETD5 Syndrome.
Manokaran et al. · Seizure: European Journal of Epilepsy, November 2023; 112:109–111 · PubMed · Read article
What was studied: Clinicians from The Hospital for Sick Children (Toronto) described a 15-year-old girl with mild intellectual disability and a confirmed pathogenic SETD5 variant who developed drug-resistant focal epilepsy at age 9.
Li et al. · Frontiers in Endocrinology, March 2023; 14:1089527 · PubMed
What was studied: This review article synthesizes the published research on SETD5 as a gene — covering its protein structure, what it actually does inside cells, how haploinsufficiency leads to neurodevelopmental disorders, why SETD5 overexpression appears in some cancers, and how it is regulated through the ubiquitin-proteasome system.
2021 publication
Anderson et al. · Clinical Genetics, 2021 · Read article
What was studied: A patient with SETD5 Syndrome presented with multiple vertebral fractures and significantly below-average bone mineral density for their age. The authors reviewed existing SETD5 literature to assess how often bone-related features had been documented.
Cheung et al. · Genesis, 2021; 59(7–8):e23421 · PubMed
What was studied: Researchers used mouse models to investigate the role of Setd5 in heart development, specifically in the cardiopharyngeal mesoderm (the tissue that gives rise to the heart and certain head/neck structures).
2020 publication
Pan et al. · Taiwanese Journal of Obstetrics and Gynecology, November 2020 · PubMed
What was studied: Clinicians described a pregnancy in which first-trimester ultrasound identified cystic hygroma. Standard chromosomal microarray returned normal results, and subsequent ultrasound was also normal. Whole-exome sequencing later identified a SETD5 frameshift variant (c.646delC) as the cause.
Pires et al. · Pediatric Blood & Cancer, 2020 · Read article
What was studied: Clinicians described a 2-year-old girl with a de novo 125-kb 3p25.3 microdeletion encompassing SETD5 who developed low-stage neuroblastoma (ganglioneuroblastoma intermixed variant, stage L1). The authors reviewed existing SETD5 and neuroblastoma literature to explore a possible biological connection.
Crippa et al. · Frontiers in Neurology, 2020; 11:631 · PubMed
What was studied: Clinicians described three patients who were initially clinically suspected of having KBG syndrome but were found through genetic testing to carry pathogenic SETD5 variants instead.
Nakagawa et al. · iScience, 2020; 23(4):101030 · PubMed
What was studied: Researchers investigated how the SETD5 protein controls the growth and proliferation of neural cells by regulating ribosomal DNA (rDNA) -- the genes that produce the cell's protein-building machinery.
Wang et al. · Cancer Cell, 2020; 37(5):689–703 · PubMed | Yang et al. · Cancer Research, 2020 & 2022 · PubMed (2020)
What was studied: A body of research has examined SETD5 in the context of cancer biology. The most prominent studies focus on SETD5 overexpression in solid tumors -- including pancreatic, breast, and other cancers. These studies describe SETD5 acting as an oncogene (a gene that promotes tumor growth) when it is overproduced in cancer cells.
Before 2020
Kellogg et al. · American Journal of Medical Genetics Part A, 2013; 161A(6):1405–1408 · PubMed
What was studied: Researchers described a patient with a small interstitial deletion at chromosome 3p25.3 and used the case to narrow down the critical region responsible for the associated intellectual disability and dysmorphic features.
Grozeva et al. · Nature Genetics, 2014 · OMIM entry
What was studied: Researchers performed exome sequencing on a large cohort of patients with unexplained intellectual disability to identify causative genetic mutations. SETD5 emerged as a recurrently mutated gene.
Kuechler et al. · European Journal of Human Genetics, 2015 · Read article
What was studied: Researchers analyzed patients with deletions of chromosome 3p25 to determine which gene within the deleted region was responsible for the clinical features observed.
Kobayashi et al. · Brain & Development, 2015 · Read article
What was studied: Researchers performed whole-exome sequencing on 11 children with early-onset epileptic encephalopathy (EOEE) and involuntary movements to identify causative genetic mutations. Seven different genes were identified across nine patients; SETD5 was one of them.
Szczałuba et al. · American Journal of Medical Genetics Part A, 2016; 170(9):2322–2327 · PubMed
What was studied: Researchers reported the first known familial case of SETD5 loss-of-function mutation -- a mother who carried the variant and passed it to her child -- demonstrating that SETD5 mutations are not always de novo.
Green et al. · American Journal of Medical Genetics Part A, 2017; 173(12):3165–3171 · PubMed
What was studied: Detailed clinical description of a 10-year-old boy found to carry a de novo SETD5 loss-of-function variant, who also had an unusual lung finding (aberrant blind ending bronchus).
Rawlins et al. · Clinical Dysmorphology, 2017; 26(2):95–97 · PubMed
What was studied: A case report describing a patient with a de novo SETD5 nonsense mutation who presented with congenital diaphragmatic hernia and severe cerebral cortical dysplasia.
Stur et al. · Genetics and Molecular Research, 2017; 16(2) · PubMed
What was studied: Clinical description of a patient with a SETD5 variant presenting with mild intellectual disability, contributing to understanding the milder end of the phenotypic spectrum.
Fernandes et al. · 2018 · PubMed
What was studied: Researchers analyzed genetic data from large autism cohorts to identify genes in which de novo mutations recurrently appeared in individuals diagnosed with autism spectrum disorder.
Deliu et al. · Nature Neuroscience, 2018 · Read article
What was studied: Using a mouse model of SETD5 haploinsufficiency, researchers examined how reduced SETD5 function alters gene expression patterns in the developing brain, and what cognitive and behavioral effects result.
Pizzo et al. · Genetics in Medicine, 2019; 21(4):816–825 · PubMed
What was studied: Researchers analyzed 757 individuals carrying variants in 13 known neurodevelopmental disorder genes — including SETD5 — to understand why two people with the same primary disease variant can have very different levels of cognitive and developmental impairment.
Powis et al. · Clinical Genetics, 2018; 93(4):752–761 · PubMed
What was studied: Researchers described a large number of patients with SETD5 mutations and 3p25 deletions to expand the known clinical phenotype and document the range of outcomes, including cases with milder-than-expected presentations.
Yagasaki et al. · Pediatric Neonatology, 2018; 59(3):319–321 · PubMed
What was studied: A case report of a child with a 10.1 Mb deletion at chromosome 3p25 that included the SETD5 gene, presenting with ptosis (drooping eyelids) and psychomotor retardation.
Moore et al. · Translational Psychiatry, 2019; 9(1):24 · Read article
What was studied: Researchers created both mouse and zebrafish models of SETD5 haploinsufficiency to characterize behavioral symptoms and test whether existing medications could reverse them.
Sessa et al. · Neuron, 2019; 104(2):271–289 · PubMed
What was studied: Researchers investigated how SETD5 functions during brain development at the molecular level, specifically how it regulates chromatin (the DNA packaging structure) and maintains accurate gene expression in developing neurons.
Fang et al. · Experimental and Therapeutic Medicine, 2019; 18(5):3737–3740 · PubMed
What was studied: A clinical case report describing a child with a novel de novo SETD5 mutation presenting with intellectual disability and psychomotor developmental delay.
Pinard et al. · Genetics in Medicine, 2020; 22(2):427–431 (epub September 2019) · PubMed
What was studied: Researchers investigated whether de novo variants in chromatin-modifying genes -- including CHD4, CNOT3, and SETD5 -- could be associated with moyamoya angiopathy, a rare cerebrovascular condition that causes narrowing of brain blood vessels.
Based on published literature, there is currently no targeted treatment specific to SETD5 Syndrome. The information below summarizes how individual features have been managed in published case reports and clinical literature.
The following areas have been mentioned in published research in the context of monitoring for individuals with SETD5 Syndrome. This list reflects what has appeared in the literature -- not a recommendation for any individual. A child's care team can advise on what is clinically appropriate.
The following are documented gaps in the published SETD5 literature as of April 2026.